Plot predicted leave-one-out probabilities

Plot predicted leave-one-out probabilities

Usage

plotLOO(sce, target, group, assay_type = "tfmfeatures")

Arguments

sce

SingleCellExperiment object

target

Name of target variable for prediction

group

Grouping variable for cross-validation, e.g., patient

assay_type

A string specifying the assay

Value

ggplot2 object

Examples

set.seed(23)
cell_file <- generate_data()
sce <- loadData(cell_file)
sce <- transformLogScale(sce)

sce$Drug <- as.factor(sce$Drug)
sce$Drug <- relevel(sce$Drug, ref = "D1")
types <- c("AreaShape", "Intensity", "Texture")

sce_single <- predictLOO(
    sce,
    target = "Drug", group = "Patient",
    interest_level = "D7", reference_level = "D1",
    types = types,
    n_threads = 1
)

plotLOO(sce_single, target = "Drug", group = "Patient")